import pandas as pd
from itertools import zip_longest
from IPython.display import HTML as html_print
import matplotlib
import matplotlib.pyplot as plt
from matplotlib import cm
import numpy as np
import re

test = pd.read_csv('../ViralFP_dataset/data/holdout_dataset.csv')
test = test.sort_values(by=['idProtein'])
test

	idProtein	Name	Class	Activation	Name_Fusogenic_Unit	Location_Fusogenic	Sequence_fusogenic	UniProtID	NcbiID	idTaxonomy	...	idTaxonomy.1	CommonName	Family	Genre	Species	SubSpecies	NcbiTax	FP corrected DL	Notes DL	seq_vfp
2	105	Envelope glycoprotein	I	binding to receptor	Envelope protein p15E	466-644	DPISLTVALMLGGITVGGMARNRNRDCGLLETAQFRQLQMAMHTDI...	P21443	NaN	105	...	105	Feline leukemia virus (isolate CFE-6)	Retroviridae	Gammaretrovirus	Feline leukemia virus	clone CFE-6	11922	NaN	NaN	PISLTVALMLGGITVGGMARN
6	146	Genome polyprotein	II	NaN	Envelope glycoprotein E1	192-384	LEYRNASGLYLLTNDCSNRSIVYEADDVILHLPGCVPCVETDNNNT...	Q81487	NaN	146	...	146	Hepatitis C virus	Flaviviridae	Hepacivirus	Hepacivirus C	isolate Tr Kj	357355	NaN	NaN	LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
5	158	Genome polyprotein	II	NaN	Envelope glycoprotein E1	192-383	LEYRNASGLYTVTNDCSNGSIVYEAGDVILHLPGCIPCVRLNNASK...	Q68801	NaN	158	...	158	Hepatitis C virus	Flaviviridae	Hepacivirus	Hepacivirus C	isolate JK049	356417	NaN	NaN	MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
0	192	Spike glycoprotein S	I	interacting with receptor	Corona S2	759-1353	AITTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEF...	P36334	NaN	192	...	192	Human Coronavirus	Coronaviridae	Betacoronavirus	Betacoronavirus 1	OC43	31631	NaN	NaN	LAATSASLFPPWTAAAGVPFY
7	225	Envelope glycoprotein gp160 (Env polyprotein)	I	binding to receptor	gp41 - by similarity	499-843	AVGMGAVLFGFLGAAGSTMGAAAITLTAQARQLLSGIVQQQSNLLK...	Q9QBZ4	NaN	225	...	225	Human immunodeficiency virus	Retroviridae	Lentivirus	Human immunodeficiency virus 1	M:F2_MP255C	388815	NaN	NaN	AVGMGAVLFGFLGAAGSTMGA
1	265	Envelope glycoprotein gp160 (Env polyprotein)	I	binding to receptor	gp41 - by similarity	488-832	AAGLGALFLGFLGDSREHMGAASITLTVQARQLLSGIVQQQNNLLR...	Q9QSQ7	NaN	265	...	265	Human immunodeficiency virus	Retroviridae	Lentivirus	Human immunodeficiency virus 1	M:F1_VI850	388813	NaN	NaN	AAGLGALFLGFLGDSREHMGA
4	574	Pre-glycoprotein polyprotein GP complex	I	low pH	GP2	266-498	GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAVAKCNVNH...	P07399	NaN	574	...	574	Lymphocytic choriomeningitis virus	Arenaviridae	Mammarenavirus	Lymphocytic choriomeningitis mammarenavirus	(strain WE)	11627	GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV	Same as Lassa	GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
3	618	fusion glycoprotein F0	I	binding to receptor	F1	102-537	FLGLILGLGAAVTAGVALAKTVQLESEIALIRDAVRNTNEAVVSLT...	P35949	NaN	618	...	618	Murine pneumonia virus (strain 15) (MPV)	Pneumoviridae	Orthopneumovirus	Murine orthopneumovirus	of mice 15	296738	NaN	NaN	FLGLILGLGAAVTAGVALAKT
8	779	G glycoprotein	III	low pH	H2	NaN	MKCLLYLAFLSIGVNCKFTIVFPHNQKGTWKNVPSNYHYCPSSSDL...	NaN	NaN	774	...	774	Vesicular stomatitis virus	Rhabdoviridae	Vesiculovirus	Indiana vesiculovirus	(strain 94GUB Central America)	434489	NaN	NaN	[FRWYGPKY CGYATVT]
9	804	Spike glycoprotein	I	binding to receptor	S2	686-1273	SVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSM...	P0DTC2	NaN	804	...	804	SARS-CoV-2	Coronaviridae	Betacoronavirus	Severe acute respiratory syndrome-related	2	2697049	NaN	NaN	SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVL...

10 rows × 26 columns

# run https://dtu.biolib.com/DeepTMHMM on 2022/12/29 >192 | TM AITTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECSKASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSENQISGYTLAATSASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQKLIANAFNNALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGSGYYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNLPDFKEELDQWFKNQTSVAPDLSLDYINVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLICLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGYQELVIKTSHDD OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII >265 | TM AAGLGALFLGFLGDSREHMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQEEIWNNMTWMEWEKEISNYSNIIYKLIEESQNQQEKNEQELLALDKWASLWNWFDISNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRKGYSPLSLQTLIPSPRGPDRPEGIEEGGGEQGKDRSVRLVTGFLALAWDDLRNLCLFSYRHLRDFILIAARIVDRGLRRGWEALKYLGNLTRYWSQELKNSAISLFNTTAIVVAEGTDRIIEVLQRAGRAVLNIPRRIRQGAERALL OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII >105 | SP+TM DPISLTVALMLGGITVGGMARNRNRDCGLLETAQFRQLQMAMHTDIQALEESISALEKSLTSLSEVVLQNRRGLDILFLQEGGLCTALKEECCFYADHTGLVRDNMAKLRERLKQRQQLFDSQQDGLEGWFNKSPWFTTLISSIMGPLMILLLILLFGPCILNRLVQFVKDRISVVQTL SSSSSSSSSSOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIII >618 | TM FLGLILGLGAAVTAGVALAKTVQLESEIALIRDAVRNTNEAVVSLTNGMSVLAKVVDDLKNFISKELLPKINRVSCDVHDITAVIRFQQLNKRLLEVSREFSSNAGLTHTVSSFMLTDRELTSIVGGMAVSAGQKEIMLSSKAIMRRNGLAILSSVNADTLVYVIQLPLFGVMDTDCWVIRSSIDCHNIADKYACLARADNGWYCHNAGSLSYFPSPTDCEIHNGYAFCDTLKSLTVPVTSRECNSNMYTTNYDCKISTSKTYVSTAVLTTMGCLVSCYGHNSCTVINNDKGIIRTLPDGCHYISNKGVDRVQVGNTVYYLSKEVGKSIVVRGEPLVLKYDPLSFPDDKFDVAIRDVEHSINQTRTFFKASDQLLDLSENRENKNLNKSYILTTLLFVVMLIIIMAVIGFILYKVLKMIRDNKLKSKSTPGLTVLS OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIII >574 | TM GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAVAKCNVNHDEEFCDMLRLIDYNKAALSKFKQDVESALHVFKTTLNSLISDQLLMRNHLRDLMGVPYCNYSKFWYLEHAKTGETSVPKCWLVTNGSYLNETHFSDQIEQEADNMITEMLRKDYIKRQGSTPLALMDLLMFSTSAYLISIFLHFVRIPTHRHIKGGSCPKPHRLTNKGICSCGAFKVPGVKTIWKRR OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII >158 | TM LEYRNASGLYTVTNDCSNGSIVYEAGDVILHLPGCIPCVRLNNASKCWTPVSPTVAVSRPGAATASLRTHVDMMVGAATLCSALYVGDLCGALFLVGQGFSWRHRQHWTVQDCNCSIYPGHLTGHRMAWDMMMNWSPAMTLIVSQVLRLPQTMFDLVIGAHWGVMAGVAYYSMQGNWAKVFLVLCLFSGVDA OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMIMMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMIIIIIIIIIMMMMMMMMMMMMMMMMMMMMMOOOOMMMMMMMMMMMMMMI >146 | TM LEYRNASGLYLLTNDCSNRSIVYEADDVILHLPGCVPCVETDNNNTSCWTPISPTVAVKHPGVTTASIRNHVNMLVAPPTLCSALYVEDAFGAVSLVGQAFTFRPRQHKTVQTCNCSIYPGHVSGHRMAWDMMMNWSPAIGLVISHLMRLPQTFFDLVVGAHWGVMAGLAYFSMQGNWAKVVIVLIMFSGVDA OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMIIIIIIIIMMMMMMMMMMMMMMMMMMMMMOOOOMMMMMMMMMMMMMMMI >225 | SP+TM AVGMGAVLFGFLGAAGSTMGAAAITLTAQARQLLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTNVRWNSSWSNKSYDDIWDNMTWMQWEKEIDNYTKTIYSLIEDAQNQQERNEQELLALDKWDSLWSWFSITNWLWYIKIFIMIVGGLIGLRIVFAVLSVVNRVRQGYSPLSLQTLIPNPRGPDRPGGIEEEGGEPDRDRSMRLVSGFLPLTWDDLRSLCSFSYRHLRDLLLIAARTVDRGVKGGWEALKYLWNLTQHWGRELKNSAISLFDTIAIAVAEGTDRIIEVLQRAGRAVLHIPRRIRQGAERFLL SSSSSSSSSSOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII >779 | SP+TM MKCLLYLAFLSIGVNCKFTIVFPHNQKGTWKNVPSNYHYCPSSSDLNWHNDLIGTALQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITHSIRSFTPSVEQCRESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNDICPTVHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNHFAYETGDKACKMQYCKHWGVRLPSGVWFEMADQDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIGAGLPISPVDLSYLAPKNPGTGPAFTIINGTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHPHIQDAASQLPDDETLFFGDTGLSKNPIELVEGWFSGWKSSIASFFFIIGLIIGLFLVLRVGIYLCIKLKHTKKRQIYTDIEMNRLGK SSSSSSSSSSSSSSSSOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIII >804 | TM SVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII ##gff-version 3 # Unnamed Length: 588 # Unnamed Number of predicted TMRs: 1 # Unnamed outside 1 528 # Unnamed TMhelix 529 549 # Unnamed inside 550 588

# run https://dtu.biolib.com/DeepTMHMM on 2022/12/29
tmd = {'192':'OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII',
       '265': 'OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII',
       '105':'SSSSSSSSSSOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIII',
       '618':'OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIII',
       '574':'OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII',
       '158':'OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMIMMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMIIIIIIIIIMMMMMMMMMMMMMMMMMMMMMOOOOMMMMMMMMMMMMMMI',
      '146':'OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMIIIIIIIIMMMMMMMMMMMMMMMMMMMMMOOOOMMMMMMMMMMMMMMMI',
       '225':'SSSSSSSSSSOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII',
      '779':'SSSSSSSSSSSSSSSSOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIII',
      '804':'OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMMMMMMMMMMMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII'
      }

Functions to plot the scores predicted in the sequence.

   
# get html element
def cstr(s, bold, color='black'):
    if s == ' ':
        return "<text style=color:#000;padding-left:10px;background-color:{}> </text>".format(color, s)
    else:
        if bold == 'b':
            return "<text style=color:#000;background-color:{}> <b><u>{}</u></b> </text>".format(color, s)
#         if tmd == 't':
#             return "<text style=color:#000;background-color:{}> <b><u>{}</u></b> </text>".format(color, s)
        else:
            return "<text style=color:#000;background-color:{}>{} </text>".format(color, s)

    #             return "<text style=color:#000;padding-left:10px;background-color:{}> <{}> </text> </{}>".format(bold,color,s,bold)
#             return "<text style=color:#000;background-color:{}>{} <{}> </text> </{}>".format(color,s,bold,bold) 

# print html
def print_color(t, bold_letter):
#     for i in range(len(t)):
#         ti = t[i][0]
#         ci = t[i][1]
#         bi = bold_letter[i][1]
    display(html_print(''.join([cstr(t[i][0],bold_letter[i][1], color=t[i][1]) for i in range(len(t))])))
#     display(html_print(''.join([cstr(ti, color=ci, bi) for ti,ci in t])))
#     display(html_print(''.join([bold(ti, bi) for ti,bi in bold_letter])))

# get appropriate color for value
def get_clr(value):
    cmap = cm.get_cmap('YlOrRd')  
    rgba = cmap(value)
    # rgb2hex accepts rgb or rgba
    col = matplotlib.colors.rgb2hex(rgba)
    return col
    
#check if this is ok
window = 21
def get_scores_seq(seq,file_predict, mode='max'):

    list_scores=[]

    
    #for each subseq
    for i in range(len(seq)-1):
        posi = i
        posf = posi+window #window_size
        
#         score = round(float(new_df['class predicted'][i]),4)
        
        if len(file_predict.columns)>2: # tem proba
#             score_0 = round(float(new_df['prob_class_0'][i]),4)   
#             score_1 = round(float(new_df['prob_class_1'][i]),4)
            score_column = 'prob_class_1'
        else:
            score_column = 'class predicted'
            
        # try put all the values in a list of the scores . each letter has a list of values of the scores in which that letter appear
        if i+window < len(file_predict):
            val = file_predict[score_column][i:posf]
        elif i >= len(file_predict):
            val = [file_predict[score_column][file_predict.shape[0]-1]]
        else: 
            val = file_predict[score_column][i:]
            
        if mode == 'max':
            new_val = max(val) # np.mean
        elif mode == 'mean':
            new_val = np.mean(val)
        list_scores.append(round(float(new_val),4))
    return list_scores


def graphic(new_score):
    plt.plot(new_score)
    plt.show()
    

def visualize(file_predict, seq, location, mode): 
    new_score = get_scores_seq(seq,file_predict,mode)

    graphic(new_score)
    text_colours = []
    bold_letter = []
    for i in range(len(seq)-2):
        text = (seq[i], get_clr(new_score[i]))
        text_colours.append(text)
        
        if type(location) == list: 
            # '[(85, 93), (129, 136)]'' : # bipartid
            if i in range(location[0][0], location[0][1]-1):
              bold_letter.append((seq[i],'b'))
            elif i in range(location[1][0], location[1][1]-1):
              bold_letter.append((seq[i],'b'))      
            else:
              bold_letter.append((seq[i],np.nan))
                    
        else: # all the others peptides
            if i in range(location[0], location[1]-1):
                bold_letter.append((seq[i],'b'))
            else:
                bold_letter.append((seq[i],np.nan))
    
    # location in bold or box around 
    print_color(text_colours, bold_letter)

def visualize_tmd(tmd_str, sequence_fusogenic):
    score_list = []
    bold_letter = []
    text_colours = []
    tmd = []
    signal= []
    for i in range(len(tmd_str)):   #'OSMI'
        ch = tmd_str[i]
        aa = sequence_fusogenic[i]


        if ch == 'M':
            membrane = 0.9
            tmd.append(aa)
        elif ch == 'S':
            # its a signal !!!!! just to not change the color 
            membrane = 0.5 # just a number to get colour
            signal.append(aa)
        else:
            membrane = 0

        text = (aa, get_clr(membrane))
        text_colours.append(text)
        bold_letter.append('none')
        score_list.append(membrane)
        
    print_color(text_colours, bold_letter)
    print('tmd', str(tmd))
    print('signal', str(signal))
        

path_results = 'results/'

def output(model_name_specific):
    
    for idProtein in test['idProtein']: 
        print('################################')
        print(idProtein)

        file_predict = pd.read_csv(path_results+model_name_specific + '/TESTSEQ{}.csv'.format(idProtein))

        test_id = test.loc[test['idProtein'] == idProtein]

        true_subseq = str(test_id['seq_vfp'].values[0])
        fusogenic = str(test_id['Sequence_fusogenic'].values[0])

        print(test_id['Name'].values[0])

        tmd_predict = tmd[str(idProtein)]    

        # index of true vfp
        print(true_subseq)
        if idProtein == 779: # éo bipartido
            true_subseq1 = 'FRWYGPKY'
            true_subseq2 = 'CGYATVT'
            index_of_vfp1 =  fusogenic.index(true_subseq1)
            index_of_vfp2 =  fusogenic.index(true_subseq2)
            location_of_vfp1 = (index_of_vfp1, index_of_vfp1 + len(true_subseq1))
            location_of_vfp2 = (index_of_vfp2, index_of_vfp2 + len(true_subseq2))
            location_of_vfp = [location_of_vfp1, location_of_vfp2]

        else:
        
            index_of_vfp =  fusogenic.index(true_subseq)
            location_of_vfp = (index_of_vfp, index_of_vfp + len(true_subseq))
        
        
        print('vfp model prediction')
        # plot the vfp model predictions 

        mode = 'max' # or 'mean'   value of each letter . 
        #the score although is by position represents the score for that position + 21. decide how to score each position.  

        visualize(file_predict, seq = fusogenic, location = location_of_vfp, mode=mode)

        print('tmd prediction by DeepTMHMM')
        visualize_tmd(tmd_predict,fusogenic)


        # ### relevant info 
        score_of_true_vfp = file_predict.loc[index_of_vfp]['class predicted']
        print('vfp predicted:', score_of_true_vfp )
        if len(file_predict.columns)>2 : # tem proba
            score_of_true_vfp_0 = file_predict.loc[index_of_vfp]['prob_class_0']
            score_of_true_vfp_1 = file_predict.loc[index_of_vfp]['prob_class_1']
            print('score vfp predicted:', score_of_true_vfp_1)
            df_sorted = file_predict.sort_values(by='prob_class_1', ascending=False)
            print('\n max score predicted')
            print('\n top scores')
            print(df_sorted[:5])

        print('index of true', index_of_vfp)
    #     print(file_predict.loc[file_predict['class predicted']==1])

Physicochemical Machine learning

True Viral Fusion Peptides are underlined. Red scores are the highest values.

# model_name_specific = 'phys_ml/All_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_svc' # 3 right. 1 wrong. 1 sars
# model_name_specific = 'phys_ml/all_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_svc_prob_weights' # 3 right. 1 wrong. 1 sars very close t just svc
# model_name_specific = 'phys_ml/All_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_rf' # predicts 2 
# model_name_specific = 'phys_ml/all_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_rf_weights' # gets 2 
# model_name_specific = 'phys_ml/all_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_gboosting'   # gets 2 

# model_name_specific = 'phys_ml/all_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_gboosting' # it gets 2 
# model_name_specific = 'phys_ml/all_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_rf' # it gets 2 
# model_name_specific = 'phys_ml/all_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_svc' # predits 3 well. 1 different. and sarscov


# model_name_specific = 'phys_ml/Half_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_rf'
# really good! 6 right. 1 right with extra wrong.  3 for sarscov 
# model_name_specific = 'phys_ml/Half_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_svc' # predicts a lot of things 

# model_name_specific = 'phys_ml/half_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_gboosting'  # 5 right. 1 wrong. 4 for Sars
# model_name_specific = 'phys_ml/half_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_rf'  # 5 right. 1 right with plus wrng 1 wrong 3 sarscov
# model_name_specific = 'phys_ml/half_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_svc'  # predits everything



# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_svc' # 5 right ( 2 have another prediction)  wrong. 3 sarscov
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_MUTUALSEL_10groupedKFOLD_cluster80_rf' # 3 right. 1 sarscov the rest nothing. 

# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_gboosting'  # 3 correct 
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_gnb' # 4 right 2 wrong 3 for sarscov 
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_knn' # predicts evrything 
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_linear_svc' # 7 right 1wrong 4for sarscov 
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_lr'  # 5 right 1 wrong 4 for sarscov
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_rf' # 3 right 1 sarscov
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_sgd' # predicts 2 right. 1 wrong. 1 sarscov 
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_svc' # nice to SEE 
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NONE_10groupedKFOLD_cluster80_linear_svc_try3'
# model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_linear_svc'


model_name_specific = 'phys_ml/third_Window21_gap1_PHYSALL_NOFSEL_10groupedKFOLD_cluster80_linear_svc' # 7 right 1wrong 4for sarscov 

output(model_name_specific)

################################
105
Envelope glycoprotein
PISLTVALMLGGITVGGMARN
vfp model prediction

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q

tmd prediction by DeepTMHMM

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q T L

tmd ['L', 'M', 'I', 'L', 'L', 'L', 'I', 'L', 'L', 'F']
signal ['D', 'P', 'I', 'S', 'L', 'T', 'V', 'A', 'L', 'M']
vfp predicted: 1
index of true 1
################################
146
Genome polyprotein
LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
vfp model prediction

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V D A

tmd ['M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'I', 'G', 'L', 'V', 'I', 'T', 'F', 'F', 'D', 'L', 'V', 'V', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'L', 'A', 'Y', 'F', 'S', 'W', 'A', 'K', 'V', 'V', 'I', 'V', 'L', 'I', 'M', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0
index of true 74
################################
158
Genome polyprotein
MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
vfp model prediction

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V D A

tmd ['M', 'M', 'V', 'G', 'A', 'A', 'T', 'L', 'C', 'S', 'A', 'L', 'Y', 'V', 'G', 'D', 'L', 'G', 'A', 'L', 'F', 'L', 'V', 'G', 'Q', 'G', 'F', 'A', 'W', 'D', 'M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'M', 'T', 'L', 'I', 'V', 'M', 'F', 'D', 'L', 'V', 'I', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'V', 'A', 'Y', 'Y', 'S', 'M', 'A', 'K', 'V', 'F', 'L', 'V', 'L', 'C', 'L', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0
index of true 73
################################
192
Spike glycoprotein S
LAATSASLFPPWTAAAGVPFY
vfp model prediction

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H

tmd prediction by DeepTMHMM

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H D D

tmd ['W', 'Y', 'V', 'W', 'L', 'L', 'I', 'C', 'L', 'A', 'G', 'V', 'A', 'M', 'L', 'V', 'L', 'L', 'F', 'F', 'I']
signal []
vfp predicted: 0
index of true 204
################################
225
Envelope glycoprotein gp160 (Env polyprotein) 
AVGMGAVLFGFLGAAGSTMGA
vfp model prediction

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F

tmd prediction by DeepTMHMM

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F L L

tmd ['I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I']
signal ['A', 'V', 'G', 'M', 'G', 'A', 'V', 'L', 'F', 'G']
vfp predicted: 1
index of true 0
################################
265
Envelope glycoprotein gp160 (Env polyprotein) 
AAGLGALFLGFLGDSREHMGA
vfp model prediction

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A

tmd prediction by DeepTMHMM

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A L L

tmd ['I', 'K', 'I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I', 'G', 'L', 'R', 'I', 'V', 'F', 'A', 'V', 'L']
signal []
vfp predicted: 1
index of true 0
################################
574
Pre-glycoprotein polyprotein GP complex
GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
vfp model prediction

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K

tmd prediction by DeepTMHMM

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K R R

tmd ['L', 'M', 'D', 'L', 'L', 'M', 'F', 'S', 'T', 'S']
signal []
vfp predicted: 1
index of true 0
################################
618
fusion glycoprotein F0
FLGLILGLGAAVTAGVALAKT
vfp model prediction

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V

tmd prediction by DeepTMHMM

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V L S

tmd ['L', 'L', 'F', 'V', 'V', 'M', 'L', 'I', 'I', 'I', 'M', 'A', 'V', 'I', 'G', 'F', 'I', 'L', 'Y']
signal []
vfp predicted: 1
index of true 0
################################
779
G glycoprotein
[FRWYGPKY CGYATVT]
vfp model prediction

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L

tmd prediction by DeepTMHMM

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L G K

tmd ['F', 'F', 'F', 'I', 'I', 'G', 'L', 'I', 'I', 'G', 'L', 'F', 'L', 'V', 'L', 'R', 'V', 'G', 'I', 'Y', 'L']
signal ['M', 'K', 'C', 'L', 'L', 'Y', 'L', 'A', 'F', 'L', 'S', 'I', 'G', 'V', 'N', 'C']
vfp predicted: 0
index of true 0
################################
804
Spike glycoprotein
SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
vfp model prediction

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H

tmd prediction by DeepTMHMM

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H Y T

tmd ['W', 'Y', 'I', 'W', 'L', 'G', 'F', 'I', 'A', 'G', 'L', 'I', 'A', 'I', 'V', 'M', 'V', 'T', 'I', 'M', 'L']
signal []
vfp predicted: 0
index of true 130

Encoding OHE LSTM

# model_name_specific = 'one_hot_dl/all_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_bayesianFinal' # deu sempre as primeiras sequencias
# model_name_specific = 'one_hot_dl/third_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_bayesianFinal' # dá tudo
# model_name_specific = 'one_hot_dl/half_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_bayesianFinal' # pessimo. tb dá tudo

# model_name_specific = 'one_hot_dl/half_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_bayesianFinalV2' # pessimo. tb dá tudo
# model_name_specific = 'one_hot_dl/half_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_bayesianFinalV2_cwei' #pessimo
# model_name_specific = 'one_hot_dl/all_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_bayesianFinalV2_cwei' #pessimo
# model_name_specific = 'one_hot_dl/half_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_att_bayesian_cwei'
# model_name_specific = 'one_hot_dl/half_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_cwei' # melhor mas horrivel na mesma 

# model_name_specific = 'one_hot_dl/all_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_cwei' # melhor mas horrivel na mesma 
# model_name_specific = 'one_hot_dl/all_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_cweiV2' #  melhor mas pessimo
# model_name_specific = 'one_hot_dl/all_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_cweiV3'
# model_name_specific = 'one_hot_dl/all_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_cweiV4'
model_name_specific = 'one_hot_dl/half_Window21_gap1_ENCODING_OHE_DL_10groupedKFOLD_cluster80_LSTM_cweiV3'


output(model_name_specific)

################################
105
Envelope glycoprotein
PISLTVALMLGGITVGGMARN
vfp model prediction

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q

tmd prediction by DeepTMHMM

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q T L

tmd ['L', 'M', 'I', 'L', 'L', 'L', 'I', 'L', 'L', 'F']
signal ['D', 'P', 'I', 'S', 'L', 'T', 'V', 'A', 'L', 'M']
vfp predicted: 1.0
score vfp predicted: 0.6083

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 1
################################
146
Genome polyprotein
LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
vfp model prediction

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V D A

tmd ['M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'I', 'G', 'L', 'V', 'I', 'T', 'F', 'F', 'D', 'L', 'V', 'V', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'L', 'A', 'Y', 'F', 'S', 'W', 'A', 'K', 'V', 'V', 'I', 'V', 'L', 'I', 'M', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 1.0
score vfp predicted: 0.6123

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 74
################################
158
Genome polyprotein
MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
vfp model prediction

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V D A

tmd ['M', 'M', 'V', 'G', 'A', 'A', 'T', 'L', 'C', 'S', 'A', 'L', 'Y', 'V', 'G', 'D', 'L', 'G', 'A', 'L', 'F', 'L', 'V', 'G', 'Q', 'G', 'F', 'A', 'W', 'D', 'M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'M', 'T', 'L', 'I', 'V', 'M', 'F', 'D', 'L', 'V', 'I', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'V', 'A', 'Y', 'Y', 'S', 'M', 'A', 'K', 'V', 'F', 'L', 'V', 'L', 'C', 'L', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 1.0
score vfp predicted: 0.6263

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 73
################################
192
Spike glycoprotein S
LAATSASLFPPWTAAAGVPFY
vfp model prediction

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H

tmd prediction by DeepTMHMM

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H D D

tmd ['W', 'Y', 'V', 'W', 'L', 'L', 'I', 'C', 'L', 'A', 'G', 'V', 'A', 'M', 'L', 'V', 'L', 'L', 'F', 'F', 'I']
signal []
vfp predicted: 1.0
score vfp predicted: 0.5333

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 204
################################
225
Envelope glycoprotein gp160 (Env polyprotein) 
AVGMGAVLFGFLGAAGSTMGA
vfp model prediction

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F

tmd prediction by DeepTMHMM

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F L L

tmd ['I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I']
signal ['A', 'V', 'G', 'M', 'G', 'A', 'V', 'L', 'F', 'G']
vfp predicted: 1.0
score vfp predicted: 0.6407

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 0
################################
265
Envelope glycoprotein gp160 (Env polyprotein) 
AAGLGALFLGFLGDSREHMGA
vfp model prediction

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A

tmd prediction by DeepTMHMM

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A L L

tmd ['I', 'K', 'I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I', 'G', 'L', 'R', 'I', 'V', 'F', 'A', 'V', 'L']
signal []
vfp predicted: 1.0
score vfp predicted: 0.6407

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 0
################################
574
Pre-glycoprotein polyprotein GP complex
GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
vfp model prediction

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K

tmd prediction by DeepTMHMM

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K R R

tmd ['L', 'M', 'D', 'L', 'L', 'M', 'F', 'S', 'T', 'S']
signal []
vfp predicted: 1.0
score vfp predicted: 0.6407

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 0
################################
618
fusion glycoprotein F0
FLGLILGLGAAVTAGVALAKT
vfp model prediction

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V

tmd prediction by DeepTMHMM

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V L S

tmd ['L', 'L', 'F', 'V', 'V', 'M', 'L', 'I', 'I', 'I', 'M', 'A', 'V', 'I', 'G', 'F', 'I', 'L', 'Y']
signal []
vfp predicted: 1.0
score vfp predicted: 0.6407

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 0
################################
779
G glycoprotein
[FRWYGPKY CGYATVT]
vfp model prediction

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L

tmd prediction by DeepTMHMM

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L G K

tmd ['F', 'F', 'F', 'I', 'I', 'G', 'L', 'I', 'I', 'G', 'L', 'F', 'L', 'V', 'L', 'R', 'V', 'G', 'I', 'Y', 'L']
signal ['M', 'K', 'C', 'L', 'L', 'Y', 'L', 'A', 'F', 'L', 'S', 'I', 'G', 'V', 'N', 'C']
vfp predicted: 1.0
score vfp predicted: 0.6407

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 0
################################
804
Spike glycoprotein
SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
vfp model prediction

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H

tmd prediction by DeepTMHMM

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H Y T

tmd ['W', 'Y', 'I', 'W', 'L', 'G', 'F', 'I', 'A', 'G', 'L', 'I', 'A', 'I', 'V', 'M', 'V', 'T', 'I', 'M', 'L']
signal []
vfp predicted: 1.0
score vfp predicted: 0.6244

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
91           91                1        0.3298        0.6702
118         118                1        0.3307        0.6693
104         104                1        0.3322        0.6678
113         113                1        0.3328        0.6672
101         101                1        0.3334        0.6666
index of true 130

WE ML

# Method 3 . E method in each protein gets 100 dim.
 
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_svc'  #  
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_svc_m3' # 5 right. 1wrong . 1SARSCOV
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_rf_m3' #  gets 2. doesnt predict anything else 
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_gboosting' # gets 3 . 2 wrong. 1 sarscov
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_knn' # 4 correct 1 half way 2 wrong 1 sarscov
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_gnb' # predicts more than 1 subsequence. 7 right. but always with others
# model_name_specific = 'we_ml/half_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_rf' # 4 correct3 3 corrected with more predictions. 2 Sarscov
# model_name_specific = 'we_ml/half_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_svc' # predicts more than 1 sequence. 3 right. 2 wrong. some predicts too much 
# model_name_specific = 'we_ml/half_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_knn'   # a lot of stuff 
# model_name_specific = 'we_ml/half_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_gnb' # Predicts more than one sequence
# model_name_specific = 'we_ml/third_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_rf' # gets 5. 1 wrong  2 for sarscov
# model_name_specific = 'we_ml/third_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_svc' # gets 3 and 2 with corrected but more predictions. 3 sarscov 
# model_name_specific = 'we_ml/third_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_gnb' # gets2. plus 5 where predicts other things. 2 for sarscov 
# model_name_specific = 'we_we_ml/third_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_knn' # predicts everything

##### method 1 each sequence is 19*100
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_svc_m1' # predicts 4. nothing more. 
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_rf' # 2 correct 1 wrong. Does not predict anything else
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_gnb' # 3 correct. 3 correct with extra seq. 1 sarscov
# model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_knn' # predicts everything
# model_name_specific = 'we_ml/half_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_rf' # 6 right predicts everything with 0.4. But it gets right a lot  
# model_name_specific = 'we_ml/half_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_svc' # predicts everything
# model_name_specific = 'we_ml/half_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_gnb' # predicts very big subsequences
# model_name_specific = 'we_ml/third_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_rf' # predicts a lot but not above 0.5. 4 right 1 wrong. 1 sarscov
# model_name_specific = 'we_ml/third_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_svc' # predicts a lot of subsequences
# model_name_specific = 'we_ml/third_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_gnb' # predicts a lot but not terrible


model_name_specific = 'we_ml/all_Window21_gap1_WEPROTVEC_10groupedKFOLD_cluster80_svc_m3' # 5 right. 1wrong . 1SARSCOV

output(model_name_specific)

################################
105
Envelope glycoprotein
PISLTVALMLGGITVGGMARN
vfp model prediction

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q

tmd prediction by DeepTMHMM

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q T L

tmd ['L', 'M', 'I', 'L', 'L', 'L', 'I', 'L', 'L', 'F']
signal ['D', 'P', 'I', 'S', 'L', 'T', 'V', 'A', 'L', 'M']
vfp predicted: 0
index of true 1
################################
146
Genome polyprotein
LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
vfp model prediction

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V D A

tmd ['M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'I', 'G', 'L', 'V', 'I', 'T', 'F', 'F', 'D', 'L', 'V', 'V', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'L', 'A', 'Y', 'F', 'S', 'W', 'A', 'K', 'V', 'V', 'I', 'V', 'L', 'I', 'M', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0
index of true 74
################################
158
Genome polyprotein
MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
vfp model prediction

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V D A

tmd ['M', 'M', 'V', 'G', 'A', 'A', 'T', 'L', 'C', 'S', 'A', 'L', 'Y', 'V', 'G', 'D', 'L', 'G', 'A', 'L', 'F', 'L', 'V', 'G', 'Q', 'G', 'F', 'A', 'W', 'D', 'M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'M', 'T', 'L', 'I', 'V', 'M', 'F', 'D', 'L', 'V', 'I', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'V', 'A', 'Y', 'Y', 'S', 'M', 'A', 'K', 'V', 'F', 'L', 'V', 'L', 'C', 'L', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 1
index of true 73
################################
192
Spike glycoprotein S
LAATSASLFPPWTAAAGVPFY
vfp model prediction

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H

tmd prediction by DeepTMHMM

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H D D

tmd ['W', 'Y', 'V', 'W', 'L', 'L', 'I', 'C', 'L', 'A', 'G', 'V', 'A', 'M', 'L', 'V', 'L', 'L', 'F', 'F', 'I']
signal []
vfp predicted: 0
index of true 204
################################
225
Envelope glycoprotein gp160 (Env polyprotein) 
AVGMGAVLFGFLGAAGSTMGA
vfp model prediction

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F

tmd prediction by DeepTMHMM

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F L L

tmd ['I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I']
signal ['A', 'V', 'G', 'M', 'G', 'A', 'V', 'L', 'F', 'G']
vfp predicted: 1
index of true 0
################################
265
Envelope glycoprotein gp160 (Env polyprotein) 
AAGLGALFLGFLGDSREHMGA
vfp model prediction

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A

tmd prediction by DeepTMHMM

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A L L

tmd ['I', 'K', 'I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I', 'G', 'L', 'R', 'I', 'V', 'F', 'A', 'V', 'L']
signal []
vfp predicted: 1
index of true 0
################################
574
Pre-glycoprotein polyprotein GP complex
GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
vfp model prediction

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K

tmd prediction by DeepTMHMM

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K R R

tmd ['L', 'M', 'D', 'L', 'L', 'M', 'F', 'S', 'T', 'S']
signal []
vfp predicted: 1
index of true 0
################################
618
fusion glycoprotein F0
FLGLILGLGAAVTAGVALAKT
vfp model prediction

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V

tmd prediction by DeepTMHMM

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V L S

tmd ['L', 'L', 'F', 'V', 'V', 'M', 'L', 'I', 'I', 'I', 'M', 'A', 'V', 'I', 'G', 'F', 'I', 'L', 'Y']
signal []
vfp predicted: 1
index of true 0
################################
779
G glycoprotein
[FRWYGPKY CGYATVT]
vfp model prediction

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L

tmd prediction by DeepTMHMM

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L G K

tmd ['F', 'F', 'F', 'I', 'I', 'G', 'L', 'I', 'I', 'G', 'L', 'F', 'L', 'V', 'L', 'R', 'V', 'G', 'I', 'Y', 'L']
signal ['M', 'K', 'C', 'L', 'L', 'Y', 'L', 'A', 'F', 'L', 'S', 'I', 'G', 'V', 'N', 'C']
vfp predicted: 0
index of true 0
################################
804
Spike glycoprotein
SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
vfp model prediction

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H

tmd prediction by DeepTMHMM

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H Y T

tmd ['W', 'Y', 'I', 'W', 'L', 'G', 'F', 'I', 'A', 'G', 'L', 'I', 'A', 'I', 'V', 'M', 'V', 'T', 'I', 'M', 'L']
signal []
vfp predicted: 0
index of true 130

WE + LSTM

# model_name_specific = 'we_dl/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_lstm1' # gets 4 correct + 2. predicts more sequences
model_name_specific = 'we_dl/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_lstm2' # 5 correct. + 1 with other seq.  1 wrong good
# model_name_specific = 'we_dl/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_lstm3' # not bad. wosrt than lstm2 and 1
# model_name_specific = 'we_dl/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_lstm4' # 4 correct. 2 correct but other sequence predicted.  
# model_name_specific = 'we_dl/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_lstm5' # # really good check 
# model_name_specific = 'we_dl/all_Window21_gap1_WEPROTVEC_method1_10groupedKFOLD_cluster80_lstm6' # its worst . but notbad

output(model_name_specific)

################################
105
Envelope glycoprotein
PISLTVALMLGGITVGGMARN
vfp model prediction

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q

tmd prediction by DeepTMHMM

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q T L

tmd ['L', 'M', 'I', 'L', 'L', 'L', 'I', 'L', 'L', 'F']
signal ['D', 'P', 'I', 'S', 'L', 'T', 'V', 'A', 'L', 'M']
vfp predicted: 1.0
score vfp predicted: 0.695

 max score predicted

 top scores
   Unnamed: 0  class predicted  prob_class_0  prob_class_1
1           1                1        0.3050        0.6950
0           0                1        0.4084        0.5916
2           2                0        0.8265        0.1735
3           3                0        0.9470        0.0530
4           4                0        0.9763        0.0237
index of true 1
################################
146
Genome polyprotein
LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
vfp model prediction

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V D A

tmd ['M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'I', 'G', 'L', 'V', 'I', 'T', 'F', 'F', 'D', 'L', 'V', 'V', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'L', 'A', 'Y', 'F', 'S', 'W', 'A', 'K', 'V', 'V', 'I', 'V', 'L', 'I', 'M', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0.0
score vfp predicted: 0.0115

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
18           18                0        0.9642        0.0358
17           17                0        0.9680        0.0320
150         150                0        0.9695        0.0305
19           19                0        0.9721        0.0279
149         149                0        0.9743        0.0257
index of true 74
################################
158
Genome polyprotein
MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
vfp model prediction

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V D A

tmd ['M', 'M', 'V', 'G', 'A', 'A', 'T', 'L', 'C', 'S', 'A', 'L', 'Y', 'V', 'G', 'D', 'L', 'G', 'A', 'L', 'F', 'L', 'V', 'G', 'Q', 'G', 'F', 'A', 'W', 'D', 'M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'M', 'T', 'L', 'I', 'V', 'M', 'F', 'D', 'L', 'V', 'I', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'V', 'A', 'Y', 'Y', 'S', 'M', 'A', 'K', 'V', 'F', 'L', 'V', 'L', 'C', 'L', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 1.0
score vfp predicted: 1.0

 max score predicted

 top scores
    Unnamed: 0  class predicted  prob_class_0  prob_class_1
70          70                1           0.0           1.0
71          71                1           0.0           1.0
72          72                1           0.0           1.0
73          73                1           0.0           1.0
74          74                1           0.0           1.0
index of true 73
################################
192
Spike glycoprotein S
LAATSASLFPPWTAAAGVPFY
vfp model prediction

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H

tmd prediction by DeepTMHMM

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H D D

tmd ['W', 'Y', 'V', 'W', 'L', 'L', 'I', 'C', 'L', 'A', 'G', 'V', 'A', 'M', 'L', 'V', 'L', 'L', 'F', 'F', 'I']
signal []
vfp predicted: 0.0
score vfp predicted: 0.0415

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
142         142                1        0.0102        0.9898
143         143                1        0.0114        0.9886
144         144                1        0.0321        0.9679
141         141                1        0.0417        0.9583
145         145                1        0.0501        0.9499
index of true 204
################################
225
Envelope glycoprotein gp160 (Env polyprotein) 
AVGMGAVLFGFLGAAGSTMGA
vfp model prediction

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F

tmd prediction by DeepTMHMM

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F L L

tmd ['I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I']
signal ['A', 'V', 'G', 'M', 'G', 'A', 'V', 'L', 'F', 'G']
vfp predicted: 1.0
score vfp predicted: 1.0

 max score predicted

 top scores
   Unnamed: 0  class predicted  prob_class_0  prob_class_1
0           0                1           0.0           1.0
1           1                1           0.0           1.0
2           2                1           0.0           1.0
3           3                1           0.0           1.0
4           4                1           0.0           1.0
index of true 0
################################
265
Envelope glycoprotein gp160 (Env polyprotein) 
AAGLGALFLGFLGDSREHMGA
vfp model prediction

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A

tmd prediction by DeepTMHMM

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A L L

tmd ['I', 'K', 'I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I', 'G', 'L', 'R', 'I', 'V', 'F', 'A', 'V', 'L']
signal []
vfp predicted: 0.0
score vfp predicted: 0.0904

 max score predicted

 top scores
    Unnamed: 0  class predicted  prob_class_0  prob_class_1
3            3                1        0.3470        0.6530
4            4                1        0.3936        0.6064
2            2                1        0.4733        0.5267
1            1                0        0.6264        0.3736
13          13                0        0.8008        0.1992
index of true 0
################################
574
Pre-glycoprotein polyprotein GP complex
GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
vfp model prediction

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K

tmd prediction by DeepTMHMM

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K R R

tmd ['L', 'M', 'D', 'L', 'L', 'M', 'F', 'S', 'T', 'S']
signal []
vfp predicted: 1.0
score vfp predicted: 1.0

 max score predicted

 top scores
   Unnamed: 0  class predicted  prob_class_0  prob_class_1
0           0                1        0.0000        1.0000
1           1                1        0.0000        1.0000
2           2                1        0.0001        0.9999
3           3                1        0.0213        0.9787
4           4                0        0.6285        0.3715
index of true 0
################################
618
fusion glycoprotein F0
FLGLILGLGAAVTAGVALAKT
vfp model prediction

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V

tmd prediction by DeepTMHMM

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V L S

tmd ['L', 'L', 'F', 'V', 'V', 'M', 'L', 'I', 'I', 'I', 'M', 'A', 'V', 'I', 'G', 'F', 'I', 'L', 'Y']
signal []
vfp predicted: 1.0
score vfp predicted: 1.0

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
0             0                1        0.0000        1.0000
1             1                1        0.0018        0.9982
2             2                1        0.0256        0.9744
113         113                1        0.0421        0.9579
3             3                1        0.1423        0.8577
index of true 0
################################
779
G glycoprotein
[FRWYGPKY CGYATVT]
vfp model prediction

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L

tmd prediction by DeepTMHMM

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L G K

tmd ['F', 'F', 'F', 'I', 'I', 'G', 'L', 'I', 'I', 'G', 'L', 'F', 'L', 'V', 'L', 'R', 'V', 'G', 'I', 'Y', 'L']
signal ['M', 'K', 'C', 'L', 'L', 'Y', 'L', 'A', 'F', 'L', 'S', 'I', 'G', 'V', 'N', 'C']
vfp predicted: 0.0
score vfp predicted: 0.0009

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
112         112                0        0.9217        0.0783
113         113                0        0.9371        0.0629
111         111                0        0.9475        0.0525
291         291                0        0.9611        0.0389
114         114                0        0.9639        0.0361
index of true 0
################################
804
Spike glycoprotein
SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
vfp model prediction

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H

tmd prediction by DeepTMHMM

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H Y T

tmd ['W', 'Y', 'I', 'W', 'L', 'G', 'F', 'I', 'A', 'G', 'L', 'I', 'A', 'I', 'V', 'M', 'V', 'T', 'I', 'M', 'L']
signal []
vfp predicted: 0.0
score vfp predicted: 0.0435

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
105         105                1        0.0001        0.9999
102         102                1        0.0001        0.9999
104         104                1        0.0001        0.9999
103         103                1        0.0001        0.9999
106         106                1        0.0004        0.9996
index of true 130

ESM2b representations + ML

# get the representations and feed to a model  pretrained.esm2_t33_650M_UR50D    (didnt changed the string)
# model_name_specific = 'esm_ml/all_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_svc' # predicts 3 
# model_name_specific = 'esm_ml/all_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_rf' # does not predict anything. just 2 (correct)
# model_name_specific = 'esm_ml/all_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_gnb' # bad
# model_name_specific = 'esm_ml/third_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_svc' # predicts a lot of things
# model_name_specific = 'esm_ml/third_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_rf' # 
# model_name_specific = 'esm_ml/third_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_gnb'
# model_name_specific ='esm_ml/half_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_rf' # predicts a lot
# model_name_specific = 'esm_ml/half_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_gnb' # predicts always 2 seqs. 


# # smaller model
# model_name_specific = 'esm_ml/all_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_svc' # predicts 5 correct. the others not predictsanything
# model_name_specific = 'esm_ml/all_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_rf' # doesnot predict anything
# model_name_specific = 'esm_ml/all_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_gnb' # predicts a lot of things

# model_name_specific = 'esm_ml/third_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_svc' # predicts a lot of things
# model_name_specific = 'esm_ml/third_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_rf' # bad
# model_name_specific = 'esm_ml/third_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_gnb' # predicts in excess

# model_name_specific = 'esm_ml/half_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_svc' # predicts to much 
# model_name_specific = 'esm_ml/half_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_rf' # predicts a lot 
# model_name_specific = 'esm_ml/half_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_gnb' # not horrible


model_name_specific = 'esm_ml/all_Window21_gap1_TRANSFORMER_T68M_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_svc' # predicts 5 correct. the others not predictsanything

output(model_name_specific)

################################
105
Envelope glycoprotein
PISLTVALMLGGITVGGMARN
vfp model prediction

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q

tmd prediction by DeepTMHMM

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q T L

tmd ['L', 'M', 'I', 'L', 'L', 'L', 'I', 'L', 'L', 'F']
signal ['D', 'P', 'I', 'S', 'L', 'T', 'V', 'A', 'L', 'M']
vfp predicted: 1
index of true 1
################################
146
Genome polyprotein
LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
vfp model prediction

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V D A

tmd ['M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'I', 'G', 'L', 'V', 'I', 'T', 'F', 'F', 'D', 'L', 'V', 'V', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'L', 'A', 'Y', 'F', 'S', 'W', 'A', 'K', 'V', 'V', 'I', 'V', 'L', 'I', 'M', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0
index of true 74
################################
158
Genome polyprotein
MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
vfp model prediction

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V D A

tmd ['M', 'M', 'V', 'G', 'A', 'A', 'T', 'L', 'C', 'S', 'A', 'L', 'Y', 'V', 'G', 'D', 'L', 'G', 'A', 'L', 'F', 'L', 'V', 'G', 'Q', 'G', 'F', 'A', 'W', 'D', 'M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'M', 'T', 'L', 'I', 'V', 'M', 'F', 'D', 'L', 'V', 'I', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'V', 'A', 'Y', 'Y', 'S', 'M', 'A', 'K', 'V', 'F', 'L', 'V', 'L', 'C', 'L', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0
index of true 73
################################
192
Spike glycoprotein S
LAATSASLFPPWTAAAGVPFY
vfp model prediction

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H

tmd prediction by DeepTMHMM

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H D D

tmd ['W', 'Y', 'V', 'W', 'L', 'L', 'I', 'C', 'L', 'A', 'G', 'V', 'A', 'M', 'L', 'V', 'L', 'L', 'F', 'F', 'I']
signal []
vfp predicted: 0
index of true 204
################################
225
Envelope glycoprotein gp160 (Env polyprotein) 
AVGMGAVLFGFLGAAGSTMGA
vfp model prediction

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F

tmd prediction by DeepTMHMM

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F L L

tmd ['I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I']
signal ['A', 'V', 'G', 'M', 'G', 'A', 'V', 'L', 'F', 'G']
vfp predicted: 1
index of true 0
################################
265
Envelope glycoprotein gp160 (Env polyprotein) 
AAGLGALFLGFLGDSREHMGA
vfp model prediction

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A

tmd prediction by DeepTMHMM

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A L L

tmd ['I', 'K', 'I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I', 'G', 'L', 'R', 'I', 'V', 'F', 'A', 'V', 'L']
signal []
vfp predicted: 1
index of true 0
################################
574
Pre-glycoprotein polyprotein GP complex
GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
vfp model prediction

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K

tmd prediction by DeepTMHMM

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K R R

tmd ['L', 'M', 'D', 'L', 'L', 'M', 'F', 'S', 'T', 'S']
signal []
vfp predicted: 0
index of true 0
################################
618
fusion glycoprotein F0
FLGLILGLGAAVTAGVALAKT
vfp model prediction

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V

tmd prediction by DeepTMHMM

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V L S

tmd ['L', 'L', 'F', 'V', 'V', 'M', 'L', 'I', 'I', 'I', 'M', 'A', 'V', 'I', 'G', 'F', 'I', 'L', 'Y']
signal []
vfp predicted: 1
index of true 0
################################
779
G glycoprotein
[FRWYGPKY CGYATVT]
vfp model prediction

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L

tmd prediction by DeepTMHMM

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L G K

tmd ['F', 'F', 'F', 'I', 'I', 'G', 'L', 'I', 'I', 'G', 'L', 'F', 'L', 'V', 'L', 'R', 'V', 'G', 'I', 'Y', 'L']
signal ['M', 'K', 'C', 'L', 'L', 'Y', 'L', 'A', 'F', 'L', 'S', 'I', 'G', 'V', 'N', 'C']
vfp predicted: 0
index of true 0
################################
804
Spike glycoprotein
SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
vfp model prediction

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H

tmd prediction by DeepTMHMM

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H Y T

tmd ['W', 'Y', 'I', 'W', 'L', 'G', 'F', 'I', 'A', 'G', 'L', 'I', 'A', 'I', 'V', 'M', 'V', 'T', 'I', 'M', 'L']
signal []
vfp predicted: 0
index of true 130

ESM2b representations + DL

# transformer small ES2bT68M + LSTM

# seq representations
# model_name_specific = 'esm2b_dl/all_Window21_gap1_TRANSFORMER_facebook_T68M_esm2_t6_8M_UR50D_token_class_10groupedKFOLD_cluster80_bilstm1' # predicts a lot/ everything
# model_name_specific = 'esm2b_dl/third_Window21_gap1_TRANSFORMER_facebook_T68M_esm2_t6_8M_UR50D_token_class_10groupedKFOLD_cluster80_bilstm1' # better but predicts a lot
# model_name_specific = 'esm2b_dl/half_Window21_gap1_TRANSFORMER_facebook_T68M_esm2_t6_8M_UR50D_token_class_10groupedKFOLD_cluster80_bilstm1' # better but predicts a lot
# model_name_specific = 'esm2b_dl/half_Window21_gap1_TRANSFORMER_facebook_esm2_t6_8M_UR50D_class_class_10groupedKFOLD_cluster80_svc' #bad. predicts a lot of things. 

# # contactrepresentations
# model_name_specific = 'esm_dl/all_Window21_gap1_TRANSFORMER_facebook_T68M_esm2_t6_8M_UR50D_contact_class_10groupedKFOLD_cluster80_bilstm1' # predicts everything .did not run CV scores
# model_name_specific = 'esm2b_dl/half_Window21_gap1_TRANSFORMER_facebook_T68M_esm2_t6_8M_UR50D_contact_class_10groupedKFOLD_cluster80_bilstm1' # predicts entire seq
# model_name_specific = 'esm2b_dl/third_Window21_gap1_TRANSFORMER_facebook_T68M_esm2_t6_8M_UR50D_contact_class_10groupedKFOLD_cluster80_bilstm1' # predicts entire seqdid not run CV scores


# bigger transformer   ES2bT33 + LSTM   

# model_name_specific =  'esm2b_dl/all_Window21_gap1_TRANSFORMER_T33_facebook_esm2_t6_8M_UR50D_token_class_10groupedKFOLD_cluster80_bilstm1' # very bad   now is empty. so accidentaly deleted
model_name_specific =  'esm2b_dl/third_Window21_gap1_TRANSFORMER_T33_facebook_esm2_t6_8M_UR50D_token_class_10groupedKFOLD_cluster80_bilstm1' # predicts a lot of things
# model_name_specific =  'esm2b_dl/half_Window21_gap1_TRANSFORMER_T33_facebook_esm2_t6_8M_UR50D_token_class_10groupedKFOLD_cluster80_bilstm1' # predicts a lot of things


# didnt pursue further 
output(model_name_specific)

################################
105
Envelope glycoprotein
PISLTVALMLGGITVGGMARN
vfp model prediction

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q

tmd prediction by DeepTMHMM

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q T L

tmd ['L', 'M', 'I', 'L', 'L', 'L', 'I', 'L', 'L', 'F']
signal ['D', 'P', 'I', 'S', 'L', 'T', 'V', 'A', 'L', 'M']
vfp predicted: 1.0
score vfp predicted: 0.7169

 max score predicted

 top scores
    Unnamed: 0  class predicted  prob_class_0  prob_class_1
76          76                1        0.0043        0.9957
81          81                1        0.0109        0.9891
75          75                1        0.0123        0.9877
78          78                1        0.0146        0.9854
49          49                1        0.0156        0.9844
index of true 1
################################
146
Genome polyprotein
LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
vfp model prediction

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V D A

tmd ['M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'I', 'G', 'L', 'V', 'I', 'T', 'F', 'F', 'D', 'L', 'V', 'V', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'L', 'A', 'Y', 'F', 'S', 'W', 'A', 'K', 'V', 'V', 'I', 'V', 'L', 'I', 'M', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0.0
score vfp predicted: 0.3481

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
149         149                1        0.0060        0.9940
150         150                1        0.0062        0.9938
81           81                1        0.0145        0.9855
147         147                1        0.0204        0.9796
151         151                1        0.0477        0.9523
index of true 74
################################
158
Genome polyprotein
MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
vfp model prediction

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V D A

tmd ['M', 'M', 'V', 'G', 'A', 'A', 'T', 'L', 'C', 'S', 'A', 'L', 'Y', 'V', 'G', 'D', 'L', 'G', 'A', 'L', 'F', 'L', 'V', 'G', 'Q', 'G', 'F', 'A', 'W', 'D', 'M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'M', 'T', 'L', 'I', 'V', 'M', 'F', 'D', 'L', 'V', 'I', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'V', 'A', 'Y', 'Y', 'S', 'M', 'A', 'K', 'V', 'F', 'L', 'V', 'L', 'C', 'L', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 1.0
score vfp predicted: 0.9998

 max score predicted

 top scores
    Unnamed: 0  class predicted  prob_class_0  prob_class_1
71          71                1        0.0001        0.9999
70          70                1        0.0001        0.9999
74          74                1        0.0001        0.9999
76          76                1        0.0001        0.9999
77          77                1        0.0001        0.9999
index of true 73
################################
192
Spike glycoprotein S
LAATSASLFPPWTAAAGVPFY
vfp model prediction

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H

tmd prediction by DeepTMHMM

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H D D

tmd ['W', 'Y', 'V', 'W', 'L', 'L', 'I', 'C', 'L', 'A', 'G', 'V', 'A', 'M', 'L', 'V', 'L', 'L', 'F', 'F', 'I']
signal []
vfp predicted: 0.0
score vfp predicted: 0.1702

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
565         565                1        0.0000        1.0000
567         567                1        0.0001        0.9999
566         566                1        0.0002        0.9998
60           60                1        0.0002        0.9998
556         556                1        0.0002        0.9998
index of true 204
################################
225
Envelope glycoprotein gp160 (Env polyprotein) 
AVGMGAVLFGFLGAAGSTMGA
vfp model prediction

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F

tmd prediction by DeepTMHMM

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F L L

tmd ['I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I']
signal ['A', 'V', 'G', 'M', 'G', 'A', 'V', 'L', 'F', 'G']
vfp predicted: 1.0
score vfp predicted: 0.9998

 max score predicted

 top scores
   Unnamed: 0  class predicted  prob_class_0  prob_class_1
3           3                1        0.0001        0.9999
4           4                1        0.0001        0.9999
1           1                1        0.0001        0.9999
0           0                1        0.0002        0.9998
2           2                1        0.0002        0.9998
index of true 0
################################
265
Envelope glycoprotein gp160 (Env polyprotein) 
AAGLGALFLGFLGDSREHMGA
vfp model prediction

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A

tmd prediction by DeepTMHMM

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A L L

tmd ['I', 'K', 'I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I', 'G', 'L', 'R', 'I', 'V', 'F', 'A', 'V', 'L']
signal []
vfp predicted: 0.0
score vfp predicted: 0.1791

 max score predicted

 top scores
    Unnamed: 0  class predicted  prob_class_0  prob_class_1
20          20                1        0.0003        0.9997
31          31                1        0.0083        0.9917
21          21                1        0.0136        0.9864
22          22                1        0.0675        0.9325
19          19                1        0.0705        0.9295
index of true 0
################################
574
Pre-glycoprotein polyprotein GP complex
GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
vfp model prediction

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K

tmd prediction by DeepTMHMM

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K R R

tmd ['L', 'M', 'D', 'L', 'L', 'M', 'F', 'S', 'T', 'S']
signal []
vfp predicted: 1.0
score vfp predicted: 0.9992

 max score predicted

 top scores
    Unnamed: 0  class predicted  prob_class_0  prob_class_1
0            0                1        0.0008        0.9992
1            1                1        0.0010        0.9990
2            2                1        0.0917        0.9083
61          61                1        0.1069        0.8931
60          60                1        0.1371        0.8629
index of true 0
################################
618
fusion glycoprotein F0
FLGLILGLGAAVTAGVALAKT
vfp model prediction

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V

tmd prediction by DeepTMHMM

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V L S

tmd ['L', 'L', 'F', 'V', 'V', 'M', 'L', 'I', 'I', 'I', 'M', 'A', 'V', 'I', 'G', 'F', 'I', 'L', 'Y']
signal []
vfp predicted: 1.0
score vfp predicted: 0.9912

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
211         211                1        0.0017        0.9983
192         192                1        0.0018        0.9982
210         210                1        0.0023        0.9977
212         212                1        0.0042        0.9958
0             0                1        0.0088        0.9912
index of true 0
################################
779
G glycoprotein
[FRWYGPKY CGYATVT]
vfp model prediction

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L

tmd prediction by DeepTMHMM

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L G K

tmd ['F', 'F', 'F', 'I', 'I', 'G', 'L', 'I', 'I', 'G', 'L', 'F', 'L', 'V', 'L', 'R', 'V', 'G', 'I', 'Y', 'L']
signal ['M', 'K', 'C', 'L', 'L', 'Y', 'L', 'A', 'F', 'L', 'S', 'I', 'G', 'V', 'N', 'C']
vfp predicted: 0.0
score vfp predicted: 0.007

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
193         193                1        0.1084        0.8916
337         337                1        0.2248        0.7752
448         448                1        0.2288        0.7712
426         426                1        0.2829        0.7171
199         199                1        0.3200        0.6800
index of true 0
################################
804
Spike glycoprotein
SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
vfp model prediction

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H

tmd prediction by DeepTMHMM

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H Y T

tmd ['W', 'Y', 'I', 'W', 'L', 'G', 'F', 'I', 'A', 'G', 'L', 'I', 'A', 'I', 'V', 'M', 'V', 'T', 'I', 'M', 'L']
signal []
vfp predicted: 1.0
score vfp predicted: 0.5252

 max score predicted

 top scores
     Unnamed: 0  class predicted  prob_class_0  prob_class_1
241         241                1        0.0002        0.9998
242         242                1        0.0005        0.9995
240         240                1        0.0006        0.9994
320         320                1        0.0007        0.9993
188         188                1        0.0014        0.9986
index of true 130

Transformers fine tuned 3 epochs

# transformers fine tune and predict (no model no hyper changed)

# the smallest   T6 8M 
# model_name_specific = 'esm2b_dl/all_Window21_gap1_TRANSFORMER_esm2_t6_8M_UR50D_finetune_class_10groupedKFOLD_cluster80' # predicts 2 correct. do not predict anything else
model_name_specific = 'esm2b_dl/third_Window21_gap1_TRANSFORMER_esm2_t6_8M_UR50D_finetune_class_10groupedKFOLD_cluster80' # better. predicts 4 correct. 1 TMD
# model_name_specific = 'esm2b_dl/half_Window21_gap1_TRANSFORMER_esm2_t6_8M_UR50D_finetune_class_10groupedKFOLD_cluster80' # it gets correct. but predicts a lot sequences

# model_name_specific = 'esm2b_dl/all_Window21_gap1_TRANSFORMER_facebook/esm2_t12_35M_UR50D_finetune_class_10groupedKFOLD_cluster80'# 4correct . then predicts anything. 1 sarscov
# model_name_specific = 'esm2b_dl/third_Window21_gap1_TRANSFORMER_facebook/third_esm2_t12_35M_UR50D_finetune_class_10groupedKFOLD_cluster80' # 4 CORRECT. 1 wrong (TMD) 2 sarscov
# model_name_specific = 'esm2b_dl/half_Window21_gap1_TRANSFORMER_facebook/esm2_t12_35M_UR50D_finetune_class_10groupedKFOLD_cluster80' # predicts everything/to much


output(model_name_specific)

################################
105
Envelope glycoprotein
PISLTVALMLGGITVGGMARN
vfp model prediction

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q

tmd prediction by DeepTMHMM

D P I S L T V A L M L G G I T V G G M A R N R N R D C G L L E T A Q F R Q L Q M A M H T D I Q A L E E S I S A L E K S L T S L S E V V L Q N R R G L D I L F L Q E G G L C T A L K E E C C F Y A D H T G L V R D N M A K L R E R L K Q R Q Q L F D S Q Q D G L E G W F N K S P W F T T L I S S I M G P L M I L L L I L L F G P C I L N R L V Q F V K D R I S V V Q T L

tmd ['L', 'M', 'I', 'L', 'L', 'L', 'I', 'L', 'L', 'F']
signal ['D', 'P', 'I', 'S', 'L', 'T', 'V', 'A', 'L', 'M']
vfp predicted: 1
score vfp predicted: 0.5110286474227905

 max score predicted

 top scores
   Unnamed: 0    label     score  class predicted  prob_class_0  prob_class_1
5           5  LABEL_1  0.663415                1      0.336585      0.663415
7           7  LABEL_1  0.652628                1      0.347372      0.652628
4           4  LABEL_1  0.608829                1      0.391171      0.608829
3           3  LABEL_1  0.578003                1      0.421997      0.578003
6           6  LABEL_1  0.544576                1      0.455424      0.544576
index of true 1
################################
146
Genome polyprotein
LVAPPTLCSALYVEDAFGAVSLVGQAFTFRPR
vfp model prediction

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y L L T N D C S N R S I V Y E A D D V I L H L P G C V P C V E T D N N N T S C W T P I S P T V A V K H P G V T T A S I R N H V N M L V A P P T L C S A L Y V E D A F G A V S L V G Q A F T F R P R Q H K T V Q T C N C S I Y P G H V S G H R M A W D M M M N W S P A I G L V I S H L M R L P Q T F F D L V V G A H W G V M A G L A Y F S M Q G N W A K V V I V L I M F S G V D A

tmd ['M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'I', 'G', 'L', 'V', 'I', 'T', 'F', 'F', 'D', 'L', 'V', 'V', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'L', 'A', 'Y', 'F', 'S', 'W', 'A', 'K', 'V', 'V', 'I', 'V', 'L', 'I', 'M', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0
score vfp predicted: 0.0710342526435852

 max score predicted

 top scores
     Unnamed: 0    label     score  class predicted  prob_class_0  \
159         159  LABEL_0  0.505556                0      0.505556   
156         156  LABEL_0  0.553455                0      0.553455   
158         158  LABEL_0  0.597904                0      0.597904   
89           89  LABEL_0  0.600529                0      0.600529   
155         155  LABEL_0  0.684759                0      0.684759   

     prob_class_1  
159      0.494444  
156      0.446545  
158      0.402096  
89       0.399471  
155      0.315241  
index of true 74
################################
158
Genome polyprotein
MVGAATLCSALYVGDLCGALFLVGQGFSWRHR
vfp model prediction

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V

tmd prediction by DeepTMHMM

L E Y R N A S G L Y T V T N D C S N G S I V Y E A G D V I L H L P G C I P C V R L N N A S K C W T P V S P T V A V S R P G A A T A S L R T H V D M M V G A A T L C S A L Y V G D L C G A L F L V G Q G F S W R H R Q H W T V Q D C N C S I Y P G H L T G H R M A W D M M M N W S P A M T L I V S Q V L R L P Q T M F D L V I G A H W G V M A G V A Y Y S M Q G N W A K V F L V L C L F S G V D A

tmd ['M', 'M', 'V', 'G', 'A', 'A', 'T', 'L', 'C', 'S', 'A', 'L', 'Y', 'V', 'G', 'D', 'L', 'G', 'A', 'L', 'F', 'L', 'V', 'G', 'Q', 'G', 'F', 'A', 'W', 'D', 'M', 'M', 'M', 'N', 'W', 'S', 'P', 'A', 'M', 'T', 'L', 'I', 'V', 'M', 'F', 'D', 'L', 'V', 'I', 'G', 'A', 'H', 'W', 'G', 'V', 'M', 'A', 'G', 'V', 'A', 'Y', 'Y', 'S', 'M', 'A', 'K', 'V', 'F', 'L', 'V', 'L', 'C', 'L', 'F', 'S', 'G', 'V', 'D']
signal []
vfp predicted: 0
score vfp predicted: 0.1068747639656066

 max score predicted

 top scores
     Unnamed: 0    label     score  class predicted  prob_class_0  \
71           71  LABEL_1  0.712424                1      0.287576   
158         158  LABEL_0  0.677653                0      0.677653   
155         155  LABEL_0  0.738579                0      0.738579   
78           78  LABEL_0  0.767368                0      0.767368   
70           70  LABEL_0  0.810682                0      0.810682   

     prob_class_1  
71       0.712424  
158      0.322347  
155      0.261421  
78       0.232632  
70       0.189318  
index of true 73
################################
192
Spike glycoprotein S
LAATSASLFPPWTAAAGVPFY
vfp model prediction

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H

tmd prediction by DeepTMHMM

A I T T G Y R F T N F E P F T V N S V N D S L E P V G G L Y E I Q I P S E F T I G N M V E F I Q T S S P K V T I D C A A F V C G D Y A A C K S Q L V E Y G S F C D N I N A I L T E V N E L L D T T Q L Q V A N S L M N G V T L S T K L K D G V N F N V D D I N F S P V L G C L G S E C S K A S S R S A I E D L L F D K V K L S D V G F V E A Y N N C T G G A E I R D L I C V Q S Y K G I K V L P P L L S E N Q I S G Y T L A A T S A S L F P P W T A A A G V P F Y L N V Q Y R I N G L G V T M D V L S Q N Q K L I A N A F N N A L Y A I Q E G F D A T N S A L V K I Q A V V N A N A E A L N N L L Q Q L S N R F G A I S A S L Q E I L S R L D A L E A E A Q I D R L I N G R L T A L N A Y V S Q Q L S D S T L V K F S A A Q A M E K V N E C V K S Q S S R I N F C G N G N H I I S L V Q N A P Y G L Y F I H F S Y V P T K Y V T A R V S P G L C I A G D R G I A P K S G Y F V N V N N T W M Y T G S G Y Y Y P E P I T E N N V V V M S T C A V N Y T K A P Y V M L N T S I P N L P D F K E E L D Q W F K N Q T S V A P D L S L D Y I N V T F L D L Q V E M N R L Q E A I K V L N Q S Y I N L K D I G T Y E Y Y V K W P W Y V W L L I C L A G V A M L V L L F F I C C C T G C G T S C F K K C G G C C D D Y T G Y Q E L V I K T S H D D

tmd ['W', 'Y', 'V', 'W', 'L', 'L', 'I', 'C', 'L', 'A', 'G', 'V', 'A', 'M', 'L', 'V', 'L', 'L', 'F', 'F', 'I']
signal []
vfp predicted: 0
score vfp predicted: 0.0810089707374572

 max score predicted

 top scores
     Unnamed: 0    label     score  class predicted  prob_class_0  \
561         561  LABEL_1  0.853126                1      0.146874   
563         563  LABEL_1  0.841447                1      0.158553   
562         562  LABEL_1  0.840442                1      0.159558   
559         559  LABEL_1  0.840439                1      0.159561   
560         560  LABEL_1  0.838301                1      0.161699   

     prob_class_1  
561      0.853126  
563      0.841447  
562      0.840442  
559      0.840439  
560      0.838301  
index of true 204
################################
225
Envelope glycoprotein gp160 (Env polyprotein) 
AVGMGAVLFGFLGAAGSTMGA
vfp model prediction

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F

tmd prediction by DeepTMHMM

A V G M G A V L F G F L G A A G S T M G A A A I T L T A Q A R Q L L S G I V Q Q Q S N L L K A I E A Q Q H L L Q L T V W G I K Q L Q A R I L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V R W N S S W S N K S Y D D I W D N M T W M Q W E K E I D N Y T K T I Y S L I E D A Q N Q Q E R N E Q E L L A L D K W D S L W S W F S I T N W L W Y I K I F I M I V G G L I G L R I V F A V L S V V N R V R Q G Y S P L S L Q T L I P N P R G P D R P G G I E E E G G E P D R D R S M R L V S G F L P L T W D D L R S L C S F S Y R H L R D L L L I A A R T V D R G V K G G W E A L K Y L W N L T Q H W G R E L K N S A I S L F D T I A I A V A E G T D R I I E V L Q R A G R A V L H I P R R I R Q G A E R F L L

tmd ['I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I']
signal ['A', 'V', 'G', 'M', 'G', 'A', 'V', 'L', 'F', 'G']
vfp predicted: 1
score vfp predicted: 0.9138033390045166

 max score predicted

 top scores
   Unnamed: 0    label     score  class predicted  prob_class_0  prob_class_1
0           0  LABEL_1  0.913803                1      0.086197      0.913803
1           1  LABEL_1  0.913337                1      0.086663      0.913337
4           4  LABEL_1  0.911635                1      0.088365      0.911635
2           2  LABEL_1  0.911470                1      0.088530      0.911470
7           7  LABEL_1  0.906559                1      0.093441      0.906559
index of true 0
################################
265
Envelope glycoprotein gp160 (Env polyprotein) 
AAGLGALFLGFLGDSREHMGA
vfp model prediction

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A

tmd prediction by DeepTMHMM

A A G L G A L F L G F L G D S R E H M G A A S I T L T V Q A R Q L L S G I V Q Q Q N N L L R A I E A Q Q H L L Q L T V W G I K Q L Q A R V L A V E R Y L K D Q Q L L G I W G C S G K L I C T T N V P W N S S W S N K S Q E E I W N N M T W M E W E K E I S N Y S N I I Y K L I E E S Q N Q Q E K N E Q E L L A L D K W A S L W N W F D I S N W L W Y I K I F I M I V G G L I G L R I V F A V L S I V N R V R K G Y S P L S L Q T L I P S P R G P D R P E G I E E G G G E Q G K D R S V R L V T G F L A L A W D D L R N L C L F S Y R H L R D F I L I A A R I V D R G L R R G W E A L K Y L G N L T R Y W S Q E L K N S A I S L F N T T A I V V A E G T D R I I E V L Q R A G R A V L N I P R R I R Q G A E R A L L

tmd ['I', 'K', 'I', 'F', 'I', 'M', 'I', 'V', 'G', 'G', 'L', 'I', 'G', 'L', 'R', 'I', 'V', 'F', 'A', 'V', 'L']
signal []
vfp predicted: 1
score vfp predicted: 0.8537814021110535

 max score predicted

 top scores
   Unnamed: 0    label     score  class predicted  prob_class_0  prob_class_1
1           1  LABEL_1  0.862039                1      0.137961      0.862039
2           2  LABEL_1  0.857080                1      0.142920      0.857080
0           0  LABEL_1  0.853781                1      0.146219      0.853781
8           8  LABEL_0  0.828593                0      0.828593      0.171407
9           9  LABEL_0  0.832909                0      0.832909      0.167091
index of true 0
################################
574
Pre-glycoprotein polyprotein GP complex
GTFTWTLSDSSGVENPGGYCLTKWMILAAELKCFGNTAV
vfp model prediction

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K

tmd prediction by DeepTMHMM

G T F T W T L S D S S G V E N P G G Y C L T K W M I L A A E L K C F G N T A V A K C N V N H D E E F C D M L R L I D Y N K A A L S K F K Q D V E S A L H V F K T T L N S L I S D Q L L M R N H L R D L M G V P Y C N Y S K F W Y L E H A K T G E T S V P K C W L V T N G S Y L N E T H F S D Q I E Q E A D N M I T E M L R K D Y I K R Q G S T P L A L M D L L M F S T S A Y L I S I F L H F V R I P T H R H I K G G S C P K P H R L T N K G I C S C G A F K V P G V K T I W K R R

tmd ['L', 'M', 'D', 'L', 'L', 'M', 'F', 'S', 'T', 'S']
signal []
vfp predicted: 0
score vfp predicted: 0.2996881604194641

 max score predicted

 top scores
     Unnamed: 0    label     score  class predicted  prob_class_0  \
32           32  LABEL_0  0.665663                0      0.665663   
0             0  LABEL_0  0.700312                0      0.700312   
1             1  LABEL_0  0.751045                0      0.751045   
2             2  LABEL_0  0.821011                0      0.821011   
200         200  LABEL_0  0.832837                0      0.832837   

     prob_class_1  
32       0.334337  
0        0.299688  
1        0.248955  
2        0.178989  
200      0.167163  
index of true 0
################################
618
fusion glycoprotein F0
FLGLILGLGAAVTAGVALAKT
vfp model prediction

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V

tmd prediction by DeepTMHMM

F L G L I L G L G A A V T A G V A L A K T V Q L E S E I A L I R D A V R N T N E A V V S L T N G M S V L A K V V D D L K N F I S K E L L P K I N R V S C D V H D I T A V I R F Q Q L N K R L L E V S R E F S S N A G L T H T V S S F M L T D R E L T S I V G G M A V S A G Q K E I M L S S K A I M R R N G L A I L S S V N A D T L V Y V I Q L P L F G V M D T D C W V I R S S I D C H N I A D K Y A C L A R A D N G W Y C H N A G S L S Y F P S P T D C E I H N G Y A F C D T L K S L T V P V T S R E C N S N M Y T T N Y D C K I S T S K T Y V S T A V L T T M G C L V S C Y G H N S C T V I N N D K G I I R T L P D G C H Y I S N K G V D R V Q V G N T V Y Y L S K E V G K S I V V R G E P L V L K Y D P L S F P D D K F D V A I R D V E H S I N Q T R T F F K A S D Q L L D L S E N R E N K N L N K S Y I L T T L L F V V M L I I I M A V I G F I L Y K V L K M I R D N K L K S K S T P G L T V L S

tmd ['L', 'L', 'F', 'V', 'V', 'M', 'L', 'I', 'I', 'I', 'M', 'A', 'V', 'I', 'G', 'F', 'I', 'L', 'Y']
signal []
vfp predicted: 1
score vfp predicted: 0.8360065817832947

 max score predicted

 top scores
   Unnamed: 0    label     score  class predicted  prob_class_0  prob_class_1
2           2  LABEL_1  0.869171                1      0.130829      0.869171
1           1  LABEL_1  0.857347                1      0.142653      0.857347
0           0  LABEL_1  0.836007                1      0.163993      0.836007
6           6  LABEL_1  0.806049                1      0.193951      0.806049
5           5  LABEL_1  0.805186                1      0.194814      0.805186
index of true 0
################################
779
G glycoprotein
[FRWYGPKY CGYATVT]
vfp model prediction

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L

tmd prediction by DeepTMHMM

M K C L L Y L A F L S I G V N C K F T I V F P H N Q K G T W K N V P S N Y H Y C P S S S D L N W H N D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C R E S I E Q T K Q G T W L N P G F P P Q S C G Y A T V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S Q F I N G K C S N D I C P T V H N S T T W H S D Y K V K G L C D S N L I S M D I T F F S E D G E L S S L G K E G T G F R S N H F A Y E T G D K A C K M Q Y C K H W G V R L P S G V W F E M A D Q D L F A A A R F P E C P E G S S I S A P S Q T S V D V S L I Q D V E R I L D Y S L C Q E T W S K I G A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I S G T T T E R E L W D D W A P Y E D V E I G P N G V L R T S S G Y K F P L Y M I G H G M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D D E T L F F G D T G L S K N P I E L V E G W F S G W K S S I A S F F F I I G L I I G L F L V L R V G I Y L C I K L K H T K K R Q I Y T D I E M N R L G K

tmd ['F', 'F', 'F', 'I', 'I', 'G', 'L', 'I', 'I', 'G', 'L', 'F', 'L', 'V', 'L', 'R', 'V', 'G', 'I', 'Y', 'L']
signal ['M', 'K', 'C', 'L', 'L', 'Y', 'L', 'A', 'F', 'L', 'S', 'I', 'G', 'V', 'N', 'C']
vfp predicted: 0
score vfp predicted: 0.0702841281890869

 max score predicted

 top scores
     Unnamed: 0    label     score  class predicted  prob_class_0  \
117         117  LABEL_0  0.803253                0      0.803253   
118         118  LABEL_0  0.861441                0      0.861441   
116         116  LABEL_0  0.876460                0      0.876460   
372         372  LABEL_0  0.877100                0      0.877100   
70           70  LABEL_0  0.878088                0      0.878088   

     prob_class_1  
117      0.196747  
118      0.138559  
116      0.123540  
372      0.122900  
70       0.121912  
index of true 0
################################
804
Spike glycoprotein
SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
vfp model prediction

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H

tmd prediction by DeepTMHMM

S V A S Q S I I A Y T M S L G A E N S V A Y S N N S I A I P T N F T I S V T T E I L P V S M T K T S V D C T M Y I C G D S T E C S N L L L Q Y G S F C T Q L N R A L T G I A V E Q D K N T Q E V F A Q V K Q I Y K T P P I K D F G G F N F S Q I L P D P S K P S K R S F I E D L L F N K V T L A D A G F I K Q Y G D C L G D I A A R D L I C A Q K F N G L T V L P P L L T D E M I A Q Y T S A L L A G T I T S G W T F G A G A A L Q I P F A M Q M A Y R F N G I G V T Q N V L Y E N Q K L I A N Q F N S A I G K I Q D S L S S T A S A L G K L Q D V V N Q N A Q A L N T L V K Q L S S N F G A I S S V L N D I L S R L D K V E A E V Q I D R L I T G R L Q S L Q T Y V T Q Q L I R A A E I R A S A N L A A T K M S E C V L G Q S K R V D F C G K G Y H L M S F P Q S A P H G V V F L H V T Y V P A Q E K N F T T A P A I C H D G K A H F P R E G V F V S N G T H W F V T Q R N F Y E P Q I I T T D N T F V S G N C D V V I G I V N N T V Y D P L Q P E L D S F K E E L D K Y F K N H T S P D V D L G D I S G I N A S V V N I Q K E I D R L N E V A K N L N E S L I D L Q E L G K Y E Q Y I K W P W Y I W L G F I A G L I A I V M V T I M L C C M T S C C S C L K G C C S C G S C C K F D E D D S E P V L K G V K L H Y T

tmd ['W', 'Y', 'I', 'W', 'L', 'G', 'F', 'I', 'A', 'G', 'L', 'I', 'A', 'I', 'V', 'M', 'V', 'T', 'I', 'M', 'L']
signal []
vfp predicted: 0
score vfp predicted: 0.0682223439216613

 max score predicted

 top scores
     Unnamed: 0    label     score  class predicted  prob_class_0  \
191         191  LABEL_1  0.857407                1      0.142593   
189         189  LABEL_1  0.855446                1      0.144554   
202         202  LABEL_1  0.788190                1      0.211810   
190         190  LABEL_1  0.779400                1      0.220600   
554         554  LABEL_1  0.772625                1      0.227375   

     prob_class_1  
191      0.857407  
189      0.855446  
202      0.788190  
190      0.779400  
554      0.772625  
index of true 130

£ get sequences scores 21 aa front get vfpep more correct